Phylogenetic analysis of the full‐length SARS‐CoV sequences: Evidence for phylogenetic discordance in three genomic regions
Identifieur interne : 005770 ( Main/Exploration ); précédent : 005769; suivant : 005771Phylogenetic analysis of the full‐length SARS‐CoV sequences: Evidence for phylogenetic discordance in three genomic regions
Auteurs : G. Magiorkinis [Grèce] ; E. Magiorkinis [Grèce] ; D. Paraskevis [Grèce, Belgique] ; A. M. Vandamme [Belgique] ; M. Van Ranst [Belgique] ; V. Moulton [Suède] ; A. Hatzakis [Grèce]Source :
- Journal of Medical Virology [ 0146-6615 ] ; 2004-11.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Viral Proteins.
- classification : SARS Virus.
- genetics : SARS Virus.
- Evolution, Molecular, Genome, Viral, Humans, Phylogeny, Recombination, Genetic, Sequence Alignment.
Abstract
The origin of the severe acute respiratory syndrome‐coronavirus (SARS‐CoV) remains unclear. Evidence based on Bayesian scanning plots and phylogenetic analysis using maximum likelihood (ML) and Bayesian methods indicates that SARS‐CoV, for the largest part of the genome (∼80%), is more closely related to Group II coronaviruses sequences, whereas in three regions in the ORF1ab gene it shows no apparent similarity to any of the previously characterized groups of coronaviruses. There is discordant phylogenetic clustering of SARS‐CoV and coronaviruses sequences, throughout the genome, compatible with either ancient recombination events or altered evolutionary rates in different lineages, or a combination of both. J. Med. Virol. 74:369–372, 2004. © 2004 Wiley‐Liss, Inc.
Url:
DOI: 10.1002/jmv.20187
Affiliations:
- Belgique, Grèce, Suède
- Attique (région), East Middle Sweden, Svealand
- Athènes, Uppsala
- Université d'Uppsala
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Evidence based on Bayesian scanning plots and phylogenetic analysis using maximum likelihood (ML) and Bayesian methods indicates that SARS‐CoV, for the largest part of the genome (∼80%), is more closely related to Group II coronaviruses sequences, whereas in three regions in the ORF1ab gene it shows no apparent similarity to any of the previously characterized groups of coronaviruses. There is discordant phylogenetic clustering of SARS‐CoV and coronaviruses sequences, throughout the genome, compatible with either ancient recombination events or altered evolutionary rates in different lineages, or a combination of both. J. Med. Virol. 74:369–372, 2004. © 2004 Wiley‐Liss, Inc.</div></front></TEI><affiliations><list><country><li>Belgique</li><li>Grèce</li><li>Suède</li></country><region><li>Attique (région)</li><li>East Middle Sweden</li><li>Svealand</li></region><settlement><li>Athènes</li><li>Uppsala</li></settlement><orgName><li>Université d'Uppsala</li></orgName></list><tree><country name="Grèce"><region name="Attique (région)"><name sortKey="Magiorkinis, G" sort="Magiorkinis, G" uniqKey="Magiorkinis G" first="G." last="Magiorkinis">G. Magiorkinis</name></region><name sortKey="Hatzakis, A" sort="Hatzakis, A" uniqKey="Hatzakis A" first="A." last="Hatzakis">A. Hatzakis</name><name sortKey="Hatzakis, A" sort="Hatzakis, A" uniqKey="Hatzakis A" first="A." last="Hatzakis">A. Hatzakis</name><name sortKey="Hatzakis, A" sort="Hatzakis, A" uniqKey="Hatzakis A" first="A." last="Hatzakis">A. Hatzakis</name><name sortKey="Magiorkinis, E" sort="Magiorkinis, E" uniqKey="Magiorkinis E" first="E." last="Magiorkinis">E. Magiorkinis</name><name sortKey="Paraskevis, D" sort="Paraskevis, D" uniqKey="Paraskevis D" first="D." last="Paraskevis">D. Paraskevis</name></country><country name="Belgique"><noRegion><name sortKey="Paraskevis, D" sort="Paraskevis, D" uniqKey="Paraskevis D" first="D." last="Paraskevis">D. Paraskevis</name></noRegion><name sortKey="Van Ranst, M" sort="Van Ranst, M" uniqKey="Van Ranst M" first="M." last="Van Ranst">M. Van Ranst</name><name sortKey="Vandamme, A M" sort="Vandamme, A M" uniqKey="Vandamme A" first="A. M." last="Vandamme">A. M. Vandamme</name></country><country name="Suède"><region name="Svealand"><name sortKey="Moulton, V" sort="Moulton, V" uniqKey="Moulton V" first="V." last="Moulton">V. Moulton</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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